Scaffold Ga0315538_1040325

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315538_1040325

Scaffold Ga0315538_1040325

Overview

Basic Information
Taxon OID	3300031864 Open in IMG/M
Scaffold ID	Ga0315538_1040325 Open in IMG/M
Source Dataset Name	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-230
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1338
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.722	Long. (^o)	-70.847	Alt. (m)		Depth (m)	2.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067408	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315538_10403252	F067408	AGGAGG	MKVNVNQPLKTLDGQTMKDADSSGNAVDATIKMAIVNAVLSPVQNENGVDKVKKYELARKIYGNDEVDLNEGEIKLIKDRVGEVFPPIVVGQIYELLKV

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