Scaffold Ga0315280_10007717

Overview

Basic Information

• Taxon OID: 3300031862
• Scaffold ID: Ga0315280_10007717
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14336
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5094
  • Long. (^o): -110.5094
  • Depth (m): 88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018304	Metagenome	235	Y
F039914	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315280_1000771712	F039914	GGA	MPTSSEREASEKRDLAVVGSFFFCEICNSVCEYDDSVWQEHQEDLKSHKMKRMLILRCWKCGSVVLDAHAEYSPERDQFWCRNCIGDAGYLKFRSPV
Ga0315280_100077176	F018304	N/A	VKSGIYVSALRYAKNFDHSALVSGMARTYGQRGIAVRSEPVLPGGKRADLAVSIGDGWTYIEVKTRTNGTKRHHLSLRQNLLRELLRLRAHSLKQLPRKESSLVVLATSASPNRRNAIGKIALARALADRIFDHDSERVVGMMIFAPFKKNDPSQKGWKYASTLIPNPNLKNGMESLEKLTRVQL