Scaffold Ga0315280_10006061

Overview

Basic Information

• Taxon OID: 3300031862
• Scaffold ID: Ga0315280_10006061
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16852
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5094
  • Long. (^o): -110.5094
  • Depth (m): 88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038042	Metagenome	166	Y
F065350	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315280_1000606116	F065350	N/A	VKITQDVLQQQSTFEQFCSQFDWYDFKILSSFLTKLDYPLDTTTQSLHSIWQLFRSRGVQISKMTISRRLGRFTLVGLLRKSPKTNPAFYEIAKGQEDLIRKIVYFKHTEELMEF
Ga0315280_1000606117	F038042	GGAG	LDLLQVSIVFVYLCLQDQIVDMKTGPKPIGRLLIPKILQVLEEAGCDLRTWTLTVRLRESMARPKLRWETVHKYLKQMVAEQMILRYEDPSGIVTYSKNPIVREKALF