NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315280_10004145

Scaffold Ga0315280_10004145


Overview

Basic Information
Taxon OID3300031862 Open in IMG/M
Scaffold IDGa0315280_10004145 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21658
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5094Long. (o)-110.5094Alt. (m)Depth (m)88
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029003Metagenome / Metatranscriptome189Y
F039914Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0315280_1000414510F029003GAGMVGRLIDRALRRRALGLCEICEKKPATRKVKFTAQYVQSASMALFDEESLVGSEFERRVCEECLSSLQNAKNVTNLTFERL
Ga0315280_1000414520F039914GGAMSKSTDSTSFQSRELAVVGSFFFCEVCNAVCEYGDPVWQEHQVQFRFYKMKRMLLLRCWNCGNVVVDAYAEYSPERNQFWCRNCIGKVGYLTFRSAT
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