NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315319_10062991

Scaffold Ga0315319_10062991


Overview

Basic Information
Taxon OID3300031861 Open in IMG/M
Scaffold IDGa0315319_10062991 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1755
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022754Metagenome / Metatranscriptome213Y
F036736Metagenome / Metatranscriptome169Y
F046426Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0315319_100629911F046426GGAGMQLKQRFGIGLVCLMFSTGCSFPWGSIVPPVANFALGFYDANDYYSKECLWYDEVKLNDDTKKWLLESNPPEIVGKDLSQVARNNDIYKEVCK
Ga0315319_100629913F022754N/AMNELIITIMLVIPSPHKLVNWSVNQIPTQIQIIHETGLEVSYNATPVSCSFRPRHAKEMVFKSPNNRCYSVYDLSSPRFVRHPDHWYKIELTQ
Ga0315319_100629915F036736GAGGMDKLNEMLIGTLALMGAFITKRVFNNHDTLSDRITALEKIVLTKEDISGLERDMSMIVTHLITKGKSD
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