Scaffold Ga0315319_10048780

Overview

Basic Information

• Taxon OID: 3300031861
• Scaffold ID: Ga0315319_10048780
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1968
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024128	Metagenome	207	Y
F027651	Metagenome / Metatranscriptome	194	Y
F054947	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315319_100487803	F054947	GGA	MQMISKNKIGKIFRDFNNEILAELIPNDMVVPPKRMEFSMMNLSWLCRNLQIKNKQHPEIKQTMAKLNTLRMKILLKGK
Ga0315319_100487805	F024128	N/A	MKNYTERGNGSLSDNLKYINDTVSHVEINRYQGTGPIMYCVVAKALTINVVTGKKAYVVWAVQEHEDFETAVQNAKDELRNRICMGAPVLQCASPDEDIKNLVEY
Ga0315319_100487806	F027651	N/A	MKIKNLVQKQLKWEVIGLANAINKNYHGWLSCVTDKNEYCVESDKFGHGFGVFSGPKYFRIEASAKSGCNGIIDQKNSKMFSAAHKENHVWGFVVKADSVNHNRGDILTRNYEKVGNVLNGNTSNLGMPTSHYPNYTDCWAGADIW