Scaffold Ga0315909_10336501

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10336501
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1110
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085379	Metagenome	111	N
F104765	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_103365012	F085379	GGAG	MSARPNPKSEVIDEMVARFAPFKEIMAAVRMQQAAVRQRIYNKGYRREYITHEERAHLLRRRGIKP
Ga0315909_103365013	F104765	AGGAGG	MKAAEIIAICSIMLCAGIGAGFFWGLRQGERIGRDREWMDSFFRNIKKDAERRDKAGRFKKR