Scaffold Ga0315909_10264280

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10264280
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1311
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F010397	Metagenome / Metatranscriptome	304	Y
F045085	Metagenome / Metatranscriptome	153	Y
F103125	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_102642801	F045085	N/A	MNKVINLTIGLIFGSIFALGLILVLCIFFVVLIPFLFYFTIREVVKQLIVNK
Ga0315909_102642803	F010397	AGGAG	MNINEFERTKPVVTMQKLNDLIKLIDEERVKTEILYRDRVRSLDNINVLLKDMKKSFMKG
Ga0315909_102642804	F001840	N/A	MKDQDSIFLICDCFEHGLLVEKFKDENEVSLSLFERGLKGRTLCWSERLRWCWQILRYGRPWSDFIILNEENQKQLKEFLNK
Ga0315909_102642805	F103125	N/A	REDGKLWLRCAEYEYTDGNPNAKSLIEKLPTRKEIKVWWQQIFPITDTIRLYAYDSDTNDTYDYWIEYDVTFVDGKVTKAKLLEFTATDNSERKEQHRKDVEYWTNRQKFEYTLFYRLIGKPYNKIISFVCRSIHKSATWITYKIWHVERFLKI