Scaffold Ga0315909_10195813

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10195813
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1607
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F017469	Metagenome / Metatranscriptome	240	Y
F018703	Metagenome	233	Y
F026822	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101958132	F018703	GGA	MERVRQRIETAKLQAVRQRNYRRARDRALARLSKDYPNVYRTYLEEEMRADESLGKKWLDITGNTRSTTSRTR
Ga0315909_101958134	F026822	AGGAG	MAEPRYLEGDEYALTGIELDIVKCKECASEYDYAEYHSYTCSDCEDKMIAKERERVSG
Ga0315909_101958135	F017469	AGGAG	MKTICQFCGWEVSKPEWYNGYEGGYACDNCLMDNATEREKERVNG
Ga0315909_101958136	F006842	AGGTGG	MKATPAICGDHLVPISECDCLSYMREITNSAERLIQLAKEREELSK