Scaffold Ga0315909_10163084

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10163084
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1816
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003601	Metagenome / Metatranscriptome	477	Y
F025487	Metagenome	201	Y
F077223	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101630842	F025487	GGGGG	MTHDFIDLDLVDKTIALIPGNAWTQVRQAIVTALVDNMPGSVIQHLTGSYDNFDRAEEILYDYYELPALSHELIADAFKIMGEVNCLELLHSLNLTEDELQTMQQ
Ga0315909_101630843	F077223	N/A	MQFFAAFKSIIPEFHAYADEDKRYNIGATWTDGQGLRDYHNLEMRYVRNSEKLALQGDPQPDGSWKYVEPNGTVHVISAERARHFMETTQAHATMMCGMLERLKDAGLYDKFIDTDANPA
Ga0315909_101630845	F003601	GGA	MDYTDDQLLAMAMANIGEYITDNSPQYILIEDDPRNEDDYDSWTYGMEVLPQDHTWQSDSIDVSPSDADMAE