Scaffold Ga0315909_10113845

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315909_10113845

Scaffold Ga0315909_10113845

Overview

Basic Information
Taxon OID	3300031857 Open in IMG/M
Scaffold ID	Ga0315909_10113845 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2302
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021757	Metagenome	217	Y
F025743	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101138452	F021757	AGGTGG	MMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSAMFAEDNPNFKHEIFREACTK
Ga0315909_101138458	F025743	GGAG	MTATITNMELVYADLLTPGQLMEGDLINIDMDIVEVISILDDATGDNYIITHRNEYGEEDEYYCTYEEMFKLYVFIDSDE

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