Scaffold Ga0315909_10103466

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10103466
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2447
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F010673	Metagenome	300	Y
F102590	Metagenome	101	N
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101034662	F010673	N/A	MNPKLIPILQRIISRDSVLNAFEPDNLPQSALAYVRHYYLNDNFLWLTPEDQDALETLPPFADNLSESIRPSGGIGNTDSTVYHIFEDGSLWLKTNAYSSVWADARDFAVEIILPRMEMTRMDADFLRAIGSEGVVESVRDDFFHAFAETLHRRCGIPHCDARGHWNAYARQLGEPQRDALELGGRESGVREGHLFAESFKSETINA
Ga0315909_101034663	F103133	N/A	MRYKIQLETPNGWSNLRESIDGGPYETCYFPTRMAAIRAVEEFAELSEFLESTRIVPANVPETENIYE
Ga0315909_101034664	F102590	N/A	MRTEQFTPGPWRTTGTNVRAGDALICYAMNHHANAETPEHEKLANARLIAAAPDLLLALERLVHPMADDEDLSYARDCIANARGK
Ga0315909_101034668	F002227	N/A	MKLTIQSKQNAQTIIDLFNAVINGEVQEHGAQPLSIYDDDKHICSIVAANGEQILELIIEREEGDMIVQQGEPETL