NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10094405

Scaffold Ga0315909_10094405


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10094405 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2598
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F019647Metagenome / Metatranscriptome228N
F045094Metagenome / Metatranscriptome153N
F090393Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100944052F090393N/AMALDRKTPFNVVFYDHEQEKIQSWALTGSSRLALLVHTIAFQKDKIEANNINKEEIIKSALDYLIHDLKKFLEIPYTTEDNA
Ga0315909_100944053F019647AGAAGMKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVIEDEQQTMPAQTEQSDKPDLAALVFEMSAIYSQAYIDIYNKISEAGVPNESATAATSTIFIQVFHKLR
Ga0315909_100944054F045094N/AMNDISKRFASYLMDDYHIKGTTEEDVEKAINKIFRYELLDDAQQVLFNEIMTEALDVPWIAEQLTDVWDRYEQEILDCKKEDYYENR
Ga0315909_100944056F003786N/AMSNLTQYQPRNSDEQAIITARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIATNEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYITYRRKIIASHDNEVAALRHQVQMEERGKAEREKLYAEFPTMIKEFTGKTFDDVPLYWYDMCLKFDMITYEEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK
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