Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10094405 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2598 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003786 | Metagenome / Metatranscriptome | 468 | N |
F019647 | Metagenome / Metatranscriptome | 228 | N |
F045094 | Metagenome / Metatranscriptome | 153 | N |
F090393 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315909_100944052 | F090393 | N/A | MALDRKTPFNVVFYDHEQEKIQSWALTGSSRLALLVHTIAFQKDKIEANNINKEEIIKSALDYLIHDLKKFLEIPYTTEDNA |
Ga0315909_100944053 | F019647 | AGAAG | MKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVIEDEQQTMPAQTEQSDKPDLAALVFEMSAIYSQAYIDIYNKISEAGVPNESATAATSTIFIQVFHKLR |
Ga0315909_100944054 | F045094 | N/A | MNDISKRFASYLMDDYHIKGTTEEDVEKAINKIFRYELLDDAQQVLFNEIMTEALDVPWIAEQLTDVWDRYEQEILDCKKEDYYENR |
Ga0315909_100944056 | F003786 | N/A | MSNLTQYQPRNSDEQAIITARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIATNEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYITYRRKIIASHDNEVAALRHQVQMEERGKAEREKLYAEFPTMIKEFTGKTFDDVPLYWYDMCLKFDMITYEEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK |
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