NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10076942

Scaffold Ga0315909_10076942


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10076942 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2962
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005146Metagenome / Metatranscriptome410Y
F042880Metagenome157Y
F079999Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1007694213F005146AGGAGGMRNVNFYEVQDRKGDVAWGGASASEAVEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKIDITALVLATIVGERGRA
Ga0315909_100769427F079999GGAGGMGDLFELSFRWQDGAAQVIIYALVIYLGLVIISKISDKRKR
Ga0315909_100769428F042880GAGMSNYTTIGELIEHLKGEDLNAPIIYQYYLAEHFEISEEVFGQVARDFDSLIPCSDSYEVISREINSKREEANV
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