Scaffold Ga0315909_10076908

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10076908
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2963
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014847	Metagenome / Metatranscriptome	259	Y
F028145	Metagenome / Metatranscriptome	192	N
F030360	Metagenome / Metatranscriptome	185	N
F045700	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100769081	F030360	N/A	MSEQTYMNLKDAVKRPVLSEKTVNRSNKAFVRMVDSYQKWNESITADEPRATYEDDIFNCLFEYDLDGYNLAEYLKSKVNLAFCDAELVDILDDMIYVKKSLEDEMLKQWVTENFLTISDDVVGKKVNAKQCSRKYENHYITGIRPDTYQVTISDNINAKGGRIVGFENVTFV
Ga0315909_100769083	F045700	GGA	MNIRPSQCFECETGTYKDVTVNYFSQLSGGRSLVTKDVTIQRCDTCGAEILDSKASKIIESNIEHNFPGYYERTRSRRN
Ga0315909_100769084	F028145	N/A	MKIFLVFAINLAVSLLSSILLYKLFKVDVSPTIISIGLIVVYMFLPQRFHDWIAEK
Ga0315909_100769085	F014847	AGTAG	MEFESNEEILRDMLEQIHTLHKENDRLLQKIEALEKHNEELNRKLKSIQALFL