NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10076908

Scaffold Ga0315909_10076908


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10076908 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2963
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014847Metagenome / Metatranscriptome259Y
F028145Metagenome / Metatranscriptome192N
F030360Metagenome / Metatranscriptome185N
F045700Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100769081F030360N/AMSEQTYMNLKDAVKRPVLSEKTVNRSNKAFVRMVDSYQKWNESITADEPRATYEDDIFNCLFEYDLDGYNLAEYLKSKVNLAFCDAELVDILDDMIYVKKSLEDEMLKQWVTENFLTISDDVVGKKVNAKQCSRKYENHYITGIRPDTYQVTISDNINAKGGRIVGFENVTFV
Ga0315909_100769083F045700GGAMNIRPSQCFECETGTYKDVTVNYFSQLSGGRSLVTKDVTIQRCDTCGAEILDSKASKIIESNIEHNFPGYYERTRSRRN
Ga0315909_100769084F028145N/AMKIFLVFAINLAVSLLSSILLYKLFKVDVSPTIISIGLIVVYMFLPQRFHDWIAEK
Ga0315909_100769085F014847AGTAGMEFESNEEILRDMLEQIHTLHKENDRLLQKIEALEKHNEELNRKLKSIQALFL

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