Scaffold Ga0315909_10069330

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10069330
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3161
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003150	Metagenome / Metatranscriptome	504	Y
F023062	Metagenome	211	Y
F024733	Metagenome	204	Y
F050225	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100693302	F050225	AGGAG	MLKSERDAELFYAAQRKFTDRQRMLDKGWGDLDAYKRLRDAEKKKERIESIRMFLWGGVAAALFCLVFFGTNYLMHGYAI
Ga0315909_100693303	F024733	N/A	MQYKKFDQALHDACDPPARDAVARWLNNLWYIDALPNPDKYAVDLVLSIKGEHIGYAEVEVRDWEFCPFNTIHIAHRKDKLFNHPRTTMYVVNRPLTHAYWIRANKIKDCPLIEVPNRAVARDEYFYDVPKDLWKVVDLTDLF
Ga0315909_100693307	F003150	N/A	VSDPYGIISGTKQVTKTLNESVKASEELSKAIDGVLAVADKAAKERATSRKKSREVNPDTTTIIEAVDEFQRLMLAKQSEEKIKEEITKKYGSHAWDEIQGIKARKQWEEKRDKYLEQNDRRVMKSVMALCYIFATWVAYECTWGRWK
Ga0315909_100693308	F023062	GAG	MNFEIDPVKYGVLWQKVDNYEAKFDEMSKKIDKMEASIDELVAMANRSRGGLWVGLGVVSVISSLVGFIAHWFSKS