Scaffold Ga0315909_10054408

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10054408
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3680
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039640	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F062765	Metagenome / Metatranscriptome	130	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1005440810	F061859	GGA	MTIEIALIILGLALAACYVVLEYQKLAKPPYQEPVKPDMAEQWKAATKADTLDNIDNWNAKVGDKIWHKEAAAELESTPINPQAAWPFPTGRQP
Ga0315909_100544083	F039640	N/A	MNIEDLLKQSQKTAGEIDILHYTNLILLEACKLIKDTPTTSAFTTFDQAVAETQRADCFKAVYNQIVRNIDELAAK
Ga0315909_100544085	F062765	GGA	MEWYRTRGLTQTQTKIGTENSMFTTEGEPYTSETIIMQYSCGRIDVRGILDEPYGDEIGVPPMLSYDWRRFGDWLDDVQTMSVWTLENLVEAYEHNNPKITWDTYDG
Ga0315909_100544089	F081346	GGAG	MAKPDPNKPITHINPPTVVPTRVMPHKPGYNDQVVVPETEANPDKPKKPKKPRK