NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10034918

Scaffold Ga0315909_10034918


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10034918 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4821
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F004115Metagenome / Metatranscriptome452Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100349186F000545GGAMRSDAHPFICSNCKLVTPHIELHKYDSTDIAEAPEEVWLVECQRCFMQRIIYPSDRVTAKEDDIVRCDQCGKWKMKAAKCRICRLAAGLEEISERYWTGNETKERPYNAAL
Ga0315909_100349189F004115GGALTRNHNTNQYCDYCKYRWGQNKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSLKEQLDDAINDFAGREKLDVELP

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