Scaffold Ga0315909_10027467

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10027467
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5586
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100274673	F007748	N/A	VNLIETTIIGTISAIVGGAVAWLTRGRFQADSLQVKQAQAVLAMWQATAEAQNKELTELRNELVVLRQRIECLETTIHTLESENATLKAMQ
Ga0315909_100274675	F009057	N/A	MATFRKFAFPNQATADKLLASLQPLDFPVPVGEIDNTVCVDVLFQDDCPASLNPYIVWPAPCGVHSFLGWDAQYEADYKEFATPQSK
Ga0315909_100274678	F001129	N/A	MLGQGGTMEFVDAPVTGENFDFIVVNAAATFTTLTGTGGEDLLAAYAMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
Ga0315909_100274679	F000847	N/A	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGSLVLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQQWTLSTSVSLTRFVESRDDRTAGWVATLSFQLPYSHSICEIPT