Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10024102 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6040 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (76.47%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000808 | Metagenome / Metatranscriptome | 882 | Y |
F003393 | Metagenome / Metatranscriptome | 489 | Y |
F005348 | Metagenome / Metatranscriptome | 403 | Y |
F047494 | Metagenome | 149 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315909_1002410211 | F005348 | AGG | MINSVMSFDCDECSGSGLIFWGDNLDYDVKPCDCENFAIGTLFTSREAD |
Ga0315909_1002410214 | F000808 | GGAG | MDKEYTYALTTSYDGELIHTLRVSDMLTAVDAWNKCVDYGTAKEYATYNLSDPTGKMYTKTFYTNGEVSIK |
Ga0315909_1002410216 | F003393 | GAGG | MITLEKDDIIEIMDYKKVDVLTAGQLMVDDAILIADEVVSISDIQSLADGYVLEVVNDFGERDTIEVGEYDQFDLMMLQ |
Ga0315909_100241029 | F047494 | AGGTGG | MTTLVKECVKHTPNKNAISIHEDMKYTFCENCESNIYSHYIEDSEIMSYWSSWKVGK |
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