NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10023836

Scaffold Ga0315909_10023836


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10023836 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6079
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049582Metagenome / Metatranscriptome146Y
F050331Metagenome / Metatranscriptome145N
F053831Metagenome / Metatranscriptome140N
F062703Metagenome / Metatranscriptome130N
F063331Metagenome / Metatranscriptome129Y
F091941Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1002383611F049582GGAGGMFANKTKIHQELKNRFRNESDLTVSMMTRAISDLDISNPAALDVMYEDVMFFTGDWPESEGWGSSDTSALIRSVKETLISNGYLKAVA
Ga0315909_1002383618F053831AGAAGMSNWQKLNYSGDQFKPFHIRVDYCDEVVDFRDMYRFDDAVGAEWVDRTEKEIQDGYKYWVILRARVFLAGIEIGSHSLGGLLFDNTDQMESMMQSDFEDIIGEAVSVARHNLKQMADAMQERVTA
Ga0315909_1002383619F063331AGGAGMTDIDNFALLNDLKELLNQVDNGDTEQVRSELKDIIDRVQADCDEKHRIYLERVERYMGHVDSALNTKGDK
Ga0315909_1002383620F062703GGAGGMLKKKIDNSSKKGMMVGYIHHSSYVVAIEPGWNITPQAMAKLLQDRYSTKEAAIQLVDSAVLVPVFRKEDYEYVEGFGDVLESNLNFHGHNLRTHVGHLFLFMKGAWQYSDNAIDWDPVSEVFKDDSGVSFAGVRDALGAVA
Ga0315909_100238367F091941AGGAGMTRIQFDMSRLKREFTRESLQAWAEFLAECNRANFYYKSDGWSQGELVDFDDTGFAEMELKWGNDHNDHEQYSDLVEYDIEKFYHEFDKMKEKLMTNPEEVIG
Ga0315909_100238368F050331AGGAGGMKLKKIKRKADREAAIQWLCQKDFEFINEGDGAGLELLDSILEDGFKGYGNYTDRELNDAIAERKEMERMFG

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