Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10023836 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6079 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (95.24%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F049582 | Metagenome / Metatranscriptome | 146 | Y |
F050331 | Metagenome / Metatranscriptome | 145 | N |
F053831 | Metagenome / Metatranscriptome | 140 | N |
F062703 | Metagenome / Metatranscriptome | 130 | N |
F063331 | Metagenome / Metatranscriptome | 129 | Y |
F091941 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315909_1002383611 | F049582 | GGAGG | MFANKTKIHQELKNRFRNESDLTVSMMTRAISDLDISNPAALDVMYEDVMFFTGDWPESEGWGSSDTSALIRSVKETLISNGYLKAVA |
Ga0315909_1002383618 | F053831 | AGAAG | MSNWQKLNYSGDQFKPFHIRVDYCDEVVDFRDMYRFDDAVGAEWVDRTEKEIQDGYKYWVILRARVFLAGIEIGSHSLGGLLFDNTDQMESMMQSDFEDIIGEAVSVARHNLKQMADAMQERVTA |
Ga0315909_1002383619 | F063331 | AGGAG | MTDIDNFALLNDLKELLNQVDNGDTEQVRSELKDIIDRVQADCDEKHRIYLERVERYMGHVDSALNTKGDK |
Ga0315909_1002383620 | F062703 | GGAGG | MLKKKIDNSSKKGMMVGYIHHSSYVVAIEPGWNITPQAMAKLLQDRYSTKEAAIQLVDSAVLVPVFRKEDYEYVEGFGDVLESNLNFHGHNLRTHVGHLFLFMKGAWQYSDNAIDWDPVSEVFKDDSGVSFAGVRDALGAVA |
Ga0315909_100238367 | F091941 | AGGAG | MTRIQFDMSRLKREFTRESLQAWAEFLAECNRANFYYKSDGWSQGELVDFDDTGFAEMELKWGNDHNDHEQYSDLVEYDIEKFYHEFDKMKEKLMTNPEEVIG |
Ga0315909_100238368 | F050331 | AGGAGG | MKLKKIKRKADREAAIQWLCQKDFEFINEGDGAGLELLDSILEDGFKGYGNYTDRELNDAIAERKEMERMFG |
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