Scaffold Ga0315909_10021397

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10021397
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6493
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004432	Metagenome / Metatranscriptome	438	Y
F005117	Metagenome	411	Y
F012435	Metagenome / Metatranscriptome	280	Y
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1002139710	F065786	AGGA	MTKDDLISLLRMTGAQENSIEAVCAAYDAGWNDALDDYAKRLVALPFEKDTIGSFSVFIKDAKK
Ga0315909_100213974	F012435	N/A	MRLRTSRKPNMSDIDLVKYGVLWQKVESMEAKIDKLEANMEILIALANKGRGGFWMGMALVSGVSSIFGYISHYWSK
Ga0315909_100213976	F005117	GAG	MKVSYDKWYPIVQPNPSMQSEVFAKRVERLDAERAVQVQVDQQVKKFHQYEYEIYEFRMRQITINIDIANLKRNIDRLV
Ga0315909_100213977	F004432	N/A	MVTKKPPAKVAPVKRRTPRPKAEQTINVSLAAPVAAKPEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILHAITTQDKMPQLAKQENLLVPARSLMKDVDGLVVLVHKANLATNSRTTVLALNSDGSREKTMEGTITSLFNASSDRNSAMVAMLNGEVLCEEFKPSSKVGEWGVKQGVKFMCRGSIPPDMGKFAGYVAIGFKDKPEDIAALKTRINLAATDMSED