Scaffold Ga0315909_10018073

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10018073
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7182
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F017132	Metagenome	242	Y
F022884	Metagenome / Metatranscriptome	212	Y
F040624	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1001807313	F022884	N/A	MLTINNLNKIVRYPIGYTFRVKSMVCGHTNYHISLIDGKGQYRDLKLNRMKGKRGNYKLSYGNSLTNLPFSDIHNLDLFCEHIKKLIC
Ga0315909_100180734	F017132	GGA	MRKIETAKVGEDLYEIVKRLPIQKFTTEPTGQRADTLKKYYGVEKILKFHQTQEYLFVNLIEELQIQTNDNKETSESNKS
Ga0315909_100180736	F006935	N/A	MDKRYAKQIIQWAEEAKEILTVRKEIIMDDDVTDEQLGTIIRMMYRAKVETQNETILKTKQNLEK
Ga0315909_100180738	F040624	AGGA	MKSEKLMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSVRLEVLKEKFVKIEKQITKSKNKKDENK