Scaffold Ga0315909_10016983

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10016983
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7435
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F019121	Metagenome	231	Y
F028501	Metagenome / Metatranscriptome	191	Y
F041172	Metagenome	160	Y
F095133	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100169834	F028501	AGGCGG	MKTITARYPGLCASTGARILPGDIIQWSKGRAVLLDRRASRVDAITLFGEQGPKTYYQNARGRCIDAPCCGCCTI
Ga0315909_100169835	F019121	AGG	MSYTLKRSINGLSLDDIKRIYDQNPNMTLRELSNLTGYAIPFLKKLLMEG
Ga0315909_100169836	F041172	GGAGG	MGKLKNAVIEARELAETYATNEALLWQARDNLQDAIENPEPDEGLASAERALHALNTYLMEAELCKR
Ga0315909_100169837	F012570	GGAGG	MQTINIDGTTYRVKFDRDPIELAKLARKPYKPKKPKDIRKFPVYTAGVTSTAEYIKRFDSLNCLQALKYHGASEYSAAQYDPTMPLIEEVTE
Ga0315909_100169839	F095133	GAGG	MSSAREDAAAVAGSNLRAYPHYLERVEILLDDVLFRVWVDYEPADRAVGVNATAWIVHAHVGDSPADIADYLNDATIKRLEAEAADYLSGGD