Scaffold Ga0315909_10007326

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10007326
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12337
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F029102	Metagenome / Metatranscriptome	189	N
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000732612	F003327	N/A	MTEFTQLAIKVQDQIANGDYTHQKYLRFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNDSNEDV
Ga0315909_1000732613	F003299	N/A	MCQLKMIAMKMYKVVFKTFDYWNGPVKLVTRIIEAYDADHVKQLIQKNDDLIMLIEEV
Ga0315909_100073264	F029102	N/A	MKHSGILSFLTFGFGYLSGISLIFADSLHFKFLGCLLISYFTFLLASEIESKE
Ga0315909_100073267	F001808	N/A	MRYLAIIILLSSCSAQYHLNKAIKKGYSCEQTGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYNTVYVPKTRLDKKIEYRLKVKTIYKDRIVQKAQAKATRPRTRGNLNLLFVGVGIGLLLSYLFKFARDKYLF
Ga0315909_100073269	F071222	N/A	MDKEQIMKIILAEEASLYDQAVELRDAFGNDDPATKRAYHQWVVIINLIDRINEETN