NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10006451

Scaffold Ga0315909_10006451


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10006451 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13237
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011293Metagenome292Y
F013406Metagenome271N
F013882Metagenome267Y
F014256Metagenome264Y
F020893Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000645110F020893GAGMPIEIYVALISGIAIICAAVLPAVLIERARKENADDHQYVRRILARVERKIDNHLEDHDNGVTRRNKNQTKQAG
Ga0315909_1000645117F013882GAGVAETSVTVVGVKETLRELQRMEPELAKEIKKDFKTIVDPIVKDARGKVVNLPLSGMSRNWKGGRLMPWAQSAVSKSIIARFSNRRRGNSLAVFSVTMKSPAGTIFDMAGRGAPNRLASALSSLYGAPSRLMWPSYERNADQVNNNLEQVVEKINKATTNRLTR
Ga0315909_1000645120F014256AGGTGGMSNMFKAGYDQLVTKLQTITGLRVFDDPRNLNPPCALVEAPTIMMATNVVADMEFRVVVIALGTGDNRTLDSLLDHIDLIRAAQIGLTDARPTTVSYGGADYPAYELTIRTKVSP
Ga0315909_100064513F011293GGAGGMASSNIDPGDAAYRAWQLTKGDRMAQYGHPFSDYTRVRRLFGSLTNFKHNLTVQEAIMFMVCVKLARLMKSLDEEKMHEDSLVDAIGYLNCLHMADARDQLLDAPLHVVGDMGIYRDQSPEA
Ga0315909_100064515F013406GAGMNLIGVIALALSGLFGVTLLATTDPETDTMGLVSESTVHTAPLTGTVGLDSPADASGSDKSVVTTMPPYTGPGCQEWADTALRAGFVLNDLWVALQVAELESGCLPNAIGDNGQSFGLMQIHTPSWCQPNKYWPEGYLQAKGMIDDCAELFDPLTNMWVAWHIATNYGWQNWSTYGNVVG

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