Scaffold Ga0315909_10006451

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10006451
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13237
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011293	Metagenome	292	Y
F013406	Metagenome	271	N
F013882	Metagenome	267	Y
F014256	Metagenome	264	Y
F020893	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000645110	F020893	GAG	MPIEIYVALISGIAIICAAVLPAVLIERARKENADDHQYVRRILARVERKIDNHLEDHDNGVTRRNKNQTKQAG
Ga0315909_1000645117	F013882	GAG	VAETSVTVVGVKETLRELQRMEPELAKEIKKDFKTIVDPIVKDARGKVVNLPLSGMSRNWKGGRLMPWAQSAVSKSIIARFSNRRRGNSLAVFSVTMKSPAGTIFDMAGRGAPNRLASALSSLYGAPSRLMWPSYERNADQVNNNLEQVVEKINKATTNRLTR
Ga0315909_1000645120	F014256	AGGTGG	MSNMFKAGYDQLVTKLQTITGLRVFDDPRNLNPPCALVEAPTIMMATNVVADMEFRVVVIALGTGDNRTLDSLLDHIDLIRAAQIGLTDARPTTVSYGGADYPAYELTIRTKVSP
Ga0315909_100064513	F011293	GGAGG	MASSNIDPGDAAYRAWQLTKGDRMAQYGHPFSDYTRVRRLFGSLTNFKHNLTVQEAIMFMVCVKLARLMKSLDEEKMHEDSLVDAIGYLNCLHMADARDQLLDAPLHVVGDMGIYRDQSPEA
Ga0315909_100064515	F013406	GAG	MNLIGVIALALSGLFGVTLLATTDPETDTMGLVSESTVHTAPLTGTVGLDSPADASGSDKSVVTTMPPYTGPGCQEWADTALRAGFVLNDLWVALQVAELESGCLPNAIGDNGQSFGLMQIHTPSWCQPNKYWPEGYLQAKGMIDDCAELFDPLTNMWVAWHIATNYGWQNWSTYGNVVG