Basic Information | |
---|---|
Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10006451 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 13237 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (77.27%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011293 | Metagenome | 292 | Y |
F013406 | Metagenome | 271 | N |
F013882 | Metagenome | 267 | Y |
F014256 | Metagenome | 264 | Y |
F020893 | Metagenome | 221 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0315909_1000645110 | F020893 | GAG | MPIEIYVALISGIAIICAAVLPAVLIERARKENADDHQYVRRILARVERKIDNHLEDHDNGVTRRNKNQTKQAG |
Ga0315909_1000645117 | F013882 | GAG | VAETSVTVVGVKETLRELQRMEPELAKEIKKDFKTIVDPIVKDARGKVVNLPLSGMSRNWKGGRLMPWAQSAVSKSIIARFSNRRRGNSLAVFSVTMKSPAGTIFDMAGRGAPNRLASALSSLYGAPSRLMWPSYERNADQVNNNLEQVVEKINKATTNRLTR |
Ga0315909_1000645120 | F014256 | AGGTGG | MSNMFKAGYDQLVTKLQTITGLRVFDDPRNLNPPCALVEAPTIMMATNVVADMEFRVVVIALGTGDNRTLDSLLDHIDLIRAAQIGLTDARPTTVSYGGADYPAYELTIRTKVSP |
Ga0315909_100064513 | F011293 | GGAGG | MASSNIDPGDAAYRAWQLTKGDRMAQYGHPFSDYTRVRRLFGSLTNFKHNLTVQEAIMFMVCVKLARLMKSLDEEKMHEDSLVDAIGYLNCLHMADARDQLLDAPLHVVGDMGIYRDQSPEA |
Ga0315909_100064515 | F013406 | GAG | MNLIGVIALALSGLFGVTLLATTDPETDTMGLVSESTVHTAPLTGTVGLDSPADASGSDKSVVTTMPPYTGPGCQEWADTALRAGFVLNDLWVALQVAELESGCLPNAIGDNGQSFGLMQIHTPSWCQPNKYWPEGYLQAKGMIDDCAELFDPLTNMWVAWHIATNYGWQNWSTYGNVVG |
⦗Top⦘ |