Scaffold Ga0315909

Basic Information
Taxon OID	3300031857 Open in IMG/M
Scaffold ID	Ga0315909_10006383 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031857 Open in IMG/M

Scaffold ID

Ga0315909_10006383 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13317
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (89.47%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13317

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (89.47%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.7464

Long. (^o)

-83.3444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005092	Metagenome / Metatranscriptome	412	Y
F005745	Metagenome / Metatranscriptome	391	Y
F009531	Metagenome / Metatranscriptome	316	Y
F015988	Metagenome / Metatranscriptome	250	Y
F047645	Metagenome / Metatranscriptome	149	Y
F058095	Metagenome / Metatranscriptome	135	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000638317	F058095	GAGG	MEYNYVLTTSYDGELFSTHRISDFMEAHEAWAKCVDYGNAKEYATYNLTDLTGKMYTKTFYSNGEVVIK
Ga0315909_1000638319	F005092	AGGA	MDKLEYALRTIANCDLCYGKGYHGFANGEDYDIEDCECNTYGIILDEDGSVIYDNGLLSEPELFSSMEAR
Ga0315909_100063832	F005745	GGAGG	VNTIELEPHLQKQVDFGSSGLDIIHGHLKVLMLDAERELEEAQRIEEENDYSDAMESMERKYWEGQCDALAHVYGLTYQLSFAIAERDKNG
Ga0315909_100063833	F015988	AGAAGG	MESEYINRKTKLIEYTKLHVISLEQDLEGIASEMELLDPASKDYNELDFEYNHMSGQILSARHLLQTMEEML
Ga0315909_1000638331	F085710	AGG	MDYFDYYDEVYTDIYLEFGADSVSDPAHAEALLGKSQN
Ga0315909_1000638335	F047645	AGAAG	MFCRHVYEYVYSDVCPDCGRYTHEPDRELDIKLFKEYYASGKHLEYKCPIEGGTIRGWWS
Ga0315909_100063837	F009531	N/A	MTLNVEIYEMEYSCSPGGIDCWEVNIQEYGNSRCVSDFDTAGNALNWVLDQYPDQMLELTVTSLPAYERINNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315909_10006383

Overview

Ecosystem & Geography

Associated Families

Sequences