NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10005786

Scaffold Ga0315909_10005786


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10005786 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14068
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004050Metagenome / Metatranscriptome455Y
F005323Metagenome / Metatranscriptome404N
F012648Metagenome / Metatranscriptome278Y
F013758Metagenome268Y
F061604Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000578610F013758N/AMTAWTPEYLVKINGTVVTDVTLANLTITSGRTDIYSQPVAGYCQVQLINFNNQSYPFNVGTGLTIEVKDSSDIFIPIFGGYITDYATAVNNAGALGSTTILTIVALGALSKLPKIIDPGVLSKDYDGDQIYTLLSGYLLGQWNEVPAAQTWATYNATETWENAVNIGLGSIDQPGDYEMIARNASSTDIYSLVSQIATSALGYIYEDAQGRIGYADSTHRQDYLATNGYVELDAGQALASGISTTVKSGDIRNKYTIAYGSNASSSYTAEDLQSQSLFGLQAQSFTSNIDKLSDAQLVADRYIALRSFPSAKFESITFPLGNPEIDDTDRDALLNVFMGMPVWIQNLPNNINDGSFQGYVEGWTFRASFNDLSLTFNASPINFSQVAVKWEQVNAAETWNTISSSLTWLDAIGVVA
Ga0315909_1000578616F004050GGAGMARKKVIDLDTYNALDAYAISMHEFYKALRRAGFAVDLCLAIITDRDAYPDWLLPAIPDRVDRLPYEDDEDED
Ga0315909_1000578619F061604N/AMVEVKLARLQETPNHIDSYVDACAYLALACELSTEEDEGEYYA
Ga0315909_1000578623F005323GAGMAAPEGALRMGHLQFMNQDGEWESFPTEDEIRRSKEITAILEEFTFTTRCCLCNEAIPYKDIKVNLKNKSWSCSKCHAVNGLTKP
Ga0315909_100057867F012648GGAGMQQNITIKYIDGSEETFMVRPPDYARWEMATKKVISQFGGMYDILFVAHSAMKREAGGKPTKALEIWMESVLDIEVGAEDPKVTPGEA

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