Scaffold Ga0315909_10005786

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10005786
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14068
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004050	Metagenome / Metatranscriptome	455	Y
F005323	Metagenome / Metatranscriptome	404	N
F012648	Metagenome / Metatranscriptome	278	Y
F013758	Metagenome	268	Y
F061604	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000578610	F013758	N/A	MTAWTPEYLVKINGTVVTDVTLANLTITSGRTDIYSQPVAGYCQVQLINFNNQSYPFNVGTGLTIEVKDSSDIFIPIFGGYITDYATAVNNAGALGSTTILTIVALGALSKLPKIIDPGVLSKDYDGDQIYTLLSGYLLGQWNEVPAAQTWATYNATETWENAVNIGLGSIDQPGDYEMIARNASSTDIYSLVSQIATSALGYIYEDAQGRIGYADSTHRQDYLATNGYVELDAGQALASGISTTVKSGDIRNKYTIAYGSNASSSYTAEDLQSQSLFGLQAQSFTSNIDKLSDAQLVADRYIALRSFPSAKFESITFPLGNPEIDDTDRDALLNVFMGMPVWIQNLPNNINDGSFQGYVEGWTFRASFNDLSLTFNASPINFSQVAVKWEQVNAAETWNTISSSLTWLDAIGVVA
Ga0315909_1000578616	F004050	GGAG	MARKKVIDLDTYNALDAYAISMHEFYKALRRAGFAVDLCLAIITDRDAYPDWLLPAIPDRVDRLPYEDDEDED
Ga0315909_1000578619	F061604	N/A	MVEVKLARLQETPNHIDSYVDACAYLALACELSTEEDEGEYYA
Ga0315909_1000578623	F005323	GAG	MAAPEGALRMGHLQFMNQDGEWESFPTEDEIRRSKEITAILEEFTFTTRCCLCNEAIPYKDIKVNLKNKSWSCSKCHAVNGLTKP
Ga0315909_100057867	F012648	GGAG	MQQNITIKYIDGSEETFMVRPPDYARWEMATKKVISQFGGMYDILFVAHSAMKREAGGKPTKALEIWMESVLDIEVGAEDPKVTPGEA