Scaffold Ga0315909_10003340

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10003340
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19658
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (86.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006467	Metagenome / Metatranscriptome	372	Y
F011388	Metagenome	291	Y
F026257	Metagenome	198	Y
F042878	Metagenome	157	N
F093778	Metagenome	106	Y
F099195	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100033401	F011388	N/A	LKQLANEVAVDLARGRSDIEFFARRWLGIQGNPGQVAWWKSCSERDESGYRPKYITTVVSAGNRAGKTMAMAVVCFHHALYKLGLPNPKYGDSQSHLAWLDSPYDWFHIGIQQETAELVFREIETILTGQHPAQKGRGCPMVKELGKIVETTKKYRGEYPWIKFNPIVGGASIHFRTTQDRAKALLGKDMNGISFDEAAFEPHLLMIYQEVLNLRRLSTGGPLHFIGTPTEGFNEYADLWEKGNPENPARDDKFISFRLSTRDNIGYGLTQENFDDVVRQQAEYLIPQNIDGFFIEARDAFFWSQSIQAVFKSGVEELGPTRHHKYVQGVDPGISHDATWAITLDITDRKLLRGTRIRKRGGKQSISAVVNMVREGHLLYQQDGAYCTTIVDSTGLGGRLFQQEFSIIRPLRGFDFGGTKAKKVELLNDLKAVLDKGQIELPTGGAWDEMRRQLL
Ga0315909_1000334010	F093778	AGGA	MDAELQALNAASVAASVKGWQVILLDQIDGVWTAIASDKMDGEPLVTGTGATRTDALLALTAALEARD
Ga0315909_1000334036	F099195	GGAG	VSEQDEQIRELFRAKAIAEGKSLRQWCRDNGIIYETLVGREIPSDLPLSAMHDHAGKYFGSCPACEKE
Ga0315909_1000334038	F042878	GAG	MKNTPKTQDFERYFTTLYDEAKGILVERQRQYGPANIESLGVPGVFSRMSDDKMSRVKKALNGSVIKGRVVLSDASLAELQHPSVRDALIDSANYALILLSLIDGQWTNLQVDYDSADDGAES
Ga0315909_100033406	F006467	GGAG	MISRIINDLVGGSWTILGLLFAVVVLPDGATKDTMSAIFTGLTLVWFLTGPLRWKD
Ga0315909_100033409	F026257	GGAGG	VTDLAPVLTGCHVCRSPLVEAINKKMRDGMSDVQLSKWLADAGHYISRITLGKHKRDHLTEDHEHKRISAVKHLQKQKKTIKATGDLAMLVRDYVHSAVQEGDLTPTLAEGLRAQEMIDRRQEKGADREVALQLAGILGGGATYQIIEATEIKPLRVGESES