Scaffold Ga0315909

Basic Information
Taxon OID	3300031857 Open in IMG/M
Scaffold ID	Ga0315909_10002423 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031857 Open in IMG/M

Scaffold ID

Ga0315909_10002423 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23916
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (90.70%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

23916

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (90.70%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.7464

Long. (^o)

-83.3444

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001143	Metagenome / Metatranscriptome	766	Y
F026266	Metagenome	198	Y
F033797	Metagenome	176	Y
F045754	Metagenome / Metatranscriptome	152	N
F054861	Metagenome	139	Y
F073554	Metagenome / Metatranscriptome	120	N
F088893	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000242313	F033797	AGGAG	MTYKARMRDDLAEEGFSVPASRTFSNYDTLDDDLYISAKELEGATQGNDPADPDDHPFCYLQLKDGRSLYFVSVDLDFEDIKETTE
Ga0315909_1000242314	F054861	AGGA	MNTKLLKHSRELFKSYDVPEHVRRSYRLKWVRSIRNLGDKWLFANYVERKEPTQ
Ga0315909_1000242315	F026266	AGGA	MTIDTITFHFVGELEDSGAIVTVQCQIDEDGDCRDLDMVFYKGLNVLDVISHSQWSDLEWQGSKKYKAERDTQAGIDFENSL
Ga0315909_1000242318	F073554	AGGA	MSIEMMNDDDFDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVAEAVLNKAHNGHVAAQEDPFAW
Ga0315909_1000242319	F045754	N/A	MTIDENKPWPFPSHFGDTAEDDKLKADCLALLENFTAFQLRGEIYYGYLDVRALKVIEELRKDRDETQSST
Ga0315909_1000242321	F001143	AGGAG	MSAWLIAVVGVVYTIVAIDLIVKGNIGLGIAFVGYALGNVGLYMEAAK
Ga0315909_1000242325	F088893	GGAG	LVTTGVKHIDKNQILFSVEGETFKIKIGEDLDLEEVYTVLLSALVHLEDLASGNTAHPSQELH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315909_10002423

Overview

Ecosystem & Geography

Associated Families

Sequences