Scaffold Ga0315909_10002093

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10002093
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26126
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (82.98%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015702	Metagenome	252	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000209312	F026864	AGGAGG	MSEQDKTAQFVFTVVIVPDNKRYEVELWDFAGDEPALIAAGEGSNWRTALGEALSKIELPTDKVEKTINDVIKEGVEDEGV
Ga0315909_1000209314	F023834	GGAGG	MSEPTVDYWKAKAQLCRDLALIQIEDEETEKEAGMNLMRMVHALSMVDTFNEGGSDDN
Ga0315909_1000209315	F015702	AGGAGG	MTIKEVELEYTVYNLVQLARKVWGDNADEYLAARLDSVITYNQMKVLIDSLKEESK
Ga0315909_1000209317	F055450	GGAGG	METENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTIPVVGVRVRTAEGRGAPVLKEDIHKGTNEGNDGGEA