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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10001707 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29263 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (38.78%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002621 | Metagenome / Metatranscriptome | 542 | Y |
| F005024 | Metagenome / Metatranscriptome | 414 | Y |
| F006107 | Metagenome / Metatranscriptome | 381 | N |
| F006262 | Metagenome / Metatranscriptome | 377 | Y |
| F010611 | Metagenome / Metatranscriptome | 301 | N |
| F012771 | Metagenome / Metatranscriptome | 277 | Y |
| F018171 | Metagenome / Metatranscriptome | 236 | Y |
| F050368 | Metagenome | 145 | N |
| F078377 | Metagenome | 116 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1000170715 | F012771 | GGAGG | VTKAKRPAEKVFIVSADTHRRLKDYATKKGYKLQFVADEAVSEYLKRKEQQ |
| Ga0315909_1000170718 | F050368 | GGA | MINEEEVRRLPLWKDWIDRNEHRLAYGLTVTIEEMEAALEEKANSMAFQMAAHNIRVLLRQRGMNFSQRGLRGAGFQILPPNTNADEMEHLNRVALNSLKASVILGTKTNLNLLSDCERKRHESVTEKMAHRLALLGRSNAGLGQEIAKQITQ |
| Ga0315909_1000170721 | F078377 | N/A | MSIVTIQLPTEPSYWGSTATEADVYRIIGNLEMMIRSQFPDVDIDFQHMPEPRGRGIWGDDECLMDSIHQFIQDNWTSAL |
| Ga0315909_1000170730 | F018171 | N/A | MANTQGSKYVFGSPASLALYDAAGALVVTGYVSPDIESYDITHEADTEEVRNSAGEVVGHIGYNNRLTLTVNFIPSGASTANALLAASLPDVNGTCVITGAPIIEIGGYVDAINAATGNRWIYAGGGSIKTTQTGKATGTITLKRYTNLTASGAATNL |
| Ga0315909_1000170731 | F006107 | GGA | MNAVALRAEKAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDEQDVMPNFPRLVVSTNSARPVQRTDLTCELEIAVELQLSADDTDEADVLTTVQVLDNWILPLFDESGASALDAPSNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATL |
| Ga0315909_1000170732 | F005024 | GAG | MTVDSSKFDAAMKAYLLQTSRDLHKAVNSRFFYLMVRLFVLVPPKSPAQERIRIGDYLSKPMGDINRKSKKTGKRIGKSRLLRRVHLIAQSKEAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKIIRIYNKGFTQFQSPKWKPLSKPAGYKAPKKTNAALVSLANQYGLPEENVAVHKGTKARGIQATPGFNPTASVVMTAGVADNQYNRVAMIYNQAMQKAMDDELAELTNHMTEAMLQNGKVLEDNGIAIK |
| Ga0315909_1000170735 | F002621 | N/A | MEKLPRLSKTIWLIALLDCLGCQMTKVVLVPSGDPVMLAKPTKASVYGFDKDKKLVGPSTVVLPAGWYALPKN |
| Ga0315909_1000170746 | F006262 | N/A | VFTFTVAIKRAYLRSVFSALGGATLLAALTSKVIAAASVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLIADYELAVYLLGQDGIAAPTDTQIFNKMMAVVLVAVTSYGGDFSNFRREGAIRTGMT |
| Ga0315909_1000170748 | F010611 | GGAG | MTQREYAKHAGVSHGYVTQLAAKGMPMHSPEAADAWRKKNIRAKSTTQHIETPPPPEPTTIEQEGPYRPAEASNPIDTATAAIDSPQGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVIAQAEKERRLVSGDWVRRVMQEHDGAVASLLKAMPKQLSGRIAPHDPEHCEIELTRWVQEVALKTLHNTDPWKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |