Scaffold Ga0315909_10001683

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10001683
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29590
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (22.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F034186	Metagenome	175	N
F035312	Metagenome	172	Y
F063706	Metagenome	129	N
F089987	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000168312	F063706	GGA	MAKKVGRPKKVQVNIEGDKTDVIIKTNKAEIEYHKDGMNHELDYDGKKVDVNIKKDETGTKVTVDAENKFLKAVATLASKFVVKRFKKK
Ga0315909_1000168315	F035312	N/A	VMGFNEIAFTVITILISGIGYFLKSLHADLRNVMKEQKSIIENQGRLKGKIELVDNESRFKYEAIEKMTQLEIKHLAEQISELTQSVKKLIEINLR
Ga0315909_1000168324	F089987	N/A	MARYANNGIFNVKYPTRRKIQRILQQIIAQDGAIDTGAMYDSVRINAKIPALGELEIQIIAMYYFGFLNNGTIYISPYDFCAELSRRLDAEGITAEIYSQYTEWMTQRYPILEVANILGEKRSIIYTFEPIGGEFSAPLSFRGML
Ga0315909_1000168329	F002018	N/A	MTSYQALINKIEAFYNAHLQVKKVGSDFAEQMPNFATKDEKYPIVFIAPITAIATENTNTMSLEITCLDIIQKDRANITVILSDCHQILVDLVNYFTFSDDYDFDILGQPAIVPLNNQVLDYAAGWVMTLDVDMSNWTDCQVPILTES
Ga0315909_1000168336	F034186	GAG	VHQSGGRYGLKISLNGMKEHLDRYLSLNYLEVLKYTRHFLDVLNIPSSIDADAVINNAYLHCAELNVQDMTEDKAKSYLLNTIKCDLIWTQGSKTKKQDLYRSQEYTLDVIDDPSDLEHKIAVEDRYNFKKALVEIYRREQKDRIKKIVFEAYYDKGHSTQTALAKYFNINSTSAYFLIKEIKENINQIQYRYEEC