Scaffold Ga0315909_10001560

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10001560
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30822
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (71.43%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F054870	Metagenome / Metatranscriptome	139	N
F058557	Metagenome / Metatranscriptome	135	Y
F062760	Metagenome	130	N
F063689	Metagenome	129	Y
F066774	Metagenome / Metatranscriptome	126	Y
F073551	Metagenome	120	Y
F078706	Metagenome	116	N
F082685	Metagenome	113	N
F086839	Metagenome / Metatranscriptome	110	N
F104778	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000156014	F063689	N/A	MSATMEVLFRYLVFDDMGEPIMRFRTKHEAECYILHRPNHKIERLPPQPKENPFDLIKEEPPF
Ga0315909_1000156016	F104778	AGGA	METKAYLIEEYNLQGELVWKMISFFEPDSLEWMRDLKGKKHNLVISELGVKNSKTIKGIEKKYDSSKFVIGH
Ga0315909_1000156017	F066774	GAG	MTQDNTMASLELWVKQLQGTLDVQEIARTKPAPIPDIAIPYLVFLRPYDKVGLLASTNKRRFTKCNIEFLFDGNTRKLKDVKMINQDDDDGN
Ga0315909_1000156021	F054870	AGGA	MKLLTALLIALPIASFAGESPKLRYNWVEKKWNYAPKEAKLKYNWTADQYEFVMPGSQLKLNTQSNNYEYVQTQISNPYQSEIGE
Ga0315909_1000156032	F082685	AGTAG	MDMQEHTKHALDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK
Ga0315909_1000156033	F073551	N/A	MQNKPETIDDIFNFLQNKTIKDIDADYYDNKNYLVILLSDGSICYISSSDSLFMAIDRHLIN
Ga0315909_1000156037	F001991	GAGG	MAIFNKNTLQQVSGFDNEIIAGELVYNQKTFWNLAFNNGGSPVNLTGATIDASIIRRQLSNIRDSRYGLTFDIADYTPPPTPVSLTISNRVDAAGTFTLEIDESTWSVISTDPQLDINAQNCVGFSGRIKISFPSSGSTPAQDMIIFLLFLVRSDGVVN
Ga0315909_1000156044	F000934	GAG	MSLNTILQVSESIAINDQKLVGQVLSRNQRISTSELLTVQPFEFTMNPMKYLLYSQNRDLLSALRVADKATEQYLNFTNIGWLNYVAYQGDMTTGQIASCQWQISSANKTLVLGNLPTISSGSYIVKKGDFCQVERYTYIATADVQRGGGSTVNIPVHRNLIVTLTNPVNAVIGQYGTTISLGGTSYTGVTFPVILREYPTYTLVPMTNDSFISWNGPFVAIEDVL
Ga0315909_1000156047	F078706	N/A	MSKLGSALGKKYEENRLSVLTRSFELGGHTFKVKVPSVSEIEEIYNYSKNPNADEIEKAYQILTEDIRKVEGIKEENNDIVIDGRSMRETATNKHILQYRITAYIKFLIGENGETLDQITYEDIEAEFPLAIQLTLVEKINEVISPEYKEVRSK
Ga0315909_1000156048	F086839	AGG	MSVKFAVNGLKETLEAFKYFQEQFGDKDAKSKVLIPAVREAMKPVLAMSKALSPKDTGALDRSLYITARRPTRKDMKSKYVTTKDSVISLVSSRPIPKKLKQQFHAQHGTLKGSEYKKAKRKFYDEAGVMHDARAIANEFGTAKMSAQPFMRVSLESQAQAVSAKLGDLIKQKMDAYKAKNLTK
Ga0315909_1000156053	F058557	GAG	MAIKRYENVVVNDLTFGTDLYGEYTTTIAPKFTTRPLVSDVKNSVAITERYRVYQDLIQFTFNYTPNLKDIVNHQDLYSITWRDKDWRITDAIESNDRMSVTLMCYRSDPTTKV
Ga0315909_100015609	F062760	N/A	LEELIKQGKLPQVTIKEKADSKRSLEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTINGIQVPYVRSTTDLTVEEFTNYIQQIESYFAQLGWSID