Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10001321 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 33508 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (82.46%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000220 | Metagenome / Metatranscriptome | 1544 | Y |
F017968 | Metagenome | 237 | Y |
F027447 | Metagenome | 194 | Y |
F029755 | Metagenome | 187 | Y |
F051918 | Metagenome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315909_100013212 | F017968 | N/A | MKQTEFLIGSEKDNNLANLSLQGRLNLQETMRNTEAQEWIKRYRKKVMEEGRGEAQYWWQQTLLDIAKRRGQAAADDLKKRMNEQKDKK |
Ga0315909_1000132127 | F027447 | GGAGG | MWKILEIQADGDLITGARYFCAKNGVETEGWWNFAEPVLTIPFADVTEEMVIGWVTRDIGAKVEARLDEQAATVAKTVVAPWLPQVFTPSI |
Ga0315909_1000132140 | F000220 | AGGA | MSDEKPSDVLSKVLSYVDSPFKLFALILMAVFAFSGYFVWQNQELLMGAYKESKKMPSIVEDRVEDAAAHLFKTTNATIVAIFKVNPMFGTRVLYRAYTKEGRDKTNDGLDVGLFTQNQSNNADVIKLMASEIPCGEYRSAQSEMGLWYIAKGVTYTCRISIPPDPSRFVGQITVGWDNEPADIQVTRTMMEIAATMLSRSKQ |
Ga0315909_1000132151 | F051918 | GGAG | MIDKFKDYFRLPSPKELAAKELEMAQRKLLEALSAQEYAKRMGEYHQDRIKRLTTYLKDE |
Ga0315909_1000132152 | F029755 | AGGAG | MIDYKLHYHFDEFVTYDDGTTLEKVKVGYDYYPEEFNLPHDHNSAEIYDVFVFSEKGDDISCDLSSSEFERIVSEAKIHHARMLKEQNEI |
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