NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10001321

Scaffold Ga0315909_10001321


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10001321 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33508
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (82.46%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F017968Metagenome237Y
F027447Metagenome194Y
F029755Metagenome187Y
F051918Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100013212F017968N/AMKQTEFLIGSEKDNNLANLSLQGRLNLQETMRNTEAQEWIKRYRKKVMEEGRGEAQYWWQQTLLDIAKRRGQAAADDLKKRMNEQKDKK
Ga0315909_1000132127F027447GGAGGMWKILEIQADGDLITGARYFCAKNGVETEGWWNFAEPVLTIPFADVTEEMVIGWVTRDIGAKVEARLDEQAATVAKTVVAPWLPQVFTPSI
Ga0315909_1000132140F000220AGGAMSDEKPSDVLSKVLSYVDSPFKLFALILMAVFAFSGYFVWQNQELLMGAYKESKKMPSIVEDRVEDAAAHLFKTTNATIVAIFKVNPMFGTRVLYRAYTKEGRDKTNDGLDVGLFTQNQSNNADVIKLMASEIPCGEYRSAQSEMGLWYIAKGVTYTCRISIPPDPSRFVGQITVGWDNEPADIQVTRTMMEIAATMLSRSKQ
Ga0315909_1000132151F051918GGAGMIDKFKDYFRLPSPKELAAKELEMAQRKLLEALSAQEYAKRMGEYHQDRIKRLTTYLKDE
Ga0315909_1000132152F029755AGGAGMIDYKLHYHFDEFVTYDDGTTLEKVKVGYDYYPEEFNLPHDHNSAEIYDVFVFSEKGDDISCDLSSSEFERIVSEAKIHHARMLKEQNEI
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