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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10001275 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33996 |
| Total Scaffold Genes | 70 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (88.57%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004793 | Metagenome / Metatranscriptome | 423 | Y |
| F006261 | Metagenome / Metatranscriptome | 377 | Y |
| F008607 | Metagenome | 330 | Y |
| F011482 | Metagenome / Metatranscriptome | 290 | Y |
| F020531 | Metagenome | 223 | Y |
| F029091 | Metagenome / Metatranscriptome | 189 | Y |
| F057363 | Metagenome / Metatranscriptome | 136 | Y |
| F066709 | Metagenome | 126 | Y |
| F068750 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1000127523 | F006261 | GAGG | MATISSGYTTTVPIQITNPATWSFTAPESPTIKVNNIDVLQPLNSTIVESYGVFKPLGASKTVIVSQSIYGIDGTYEFVTTGETEWDELYPVLTYQGTLHVHDPLGRQKYVRFVDRNWTESGNINSLVRRVKVTYYEVGAP |
| Ga0315909_1000127526 | F057363 | AGGAG | MDSKTQAMLASYGRSFLAAVTTAFMITGGDILALDGDALKAILAAGVSAVLPVAIRAANPKDPAFGKIADGVTEAVVKKITAKKSVKKK |
| Ga0315909_1000127528 | F011482 | AGGAG | MRRLDDLTMEVKQMNLNVGQTYLRKDVYDSDTERISQAMDHITDRLEKMESRSEWVIRTVGALFIATVVGASMYVGQIIGI |
| Ga0315909_1000127532 | F068750 | GGAGG | VSIRWITKVWSDSPYDGTRLLIHLALADISHDDGRFFASQSNLATKGRCSVEYVRKVINEMIADGHLKIITKGNSRGNATVYQLIWKKLPNIVGEEQSLGEVELPNSDTPNSPTLEAQLPNATPHHPSYTSVLSTTKSDETAIAVVALSEAVARKWWEKQRVKPLGKSAWHSLLAICQAA |
| Ga0315909_1000127533 | F020531 | AGGAG | MNNQQLEQSTWQRSSAMSLSDLAILLGFIGIYDLRIQVDELKVRAWAESLDSDVPLDEAKKIVSWHYSNLDTAVTPAHINREWRRRLADARERERGRLMSLQYQELEKKKASPEFVTQIKKELLEKLNRGKDAPVEDDNGTVAPNS |
| Ga0315909_1000127543 | F066709 | GGA | MSRSDWDLDLRFGQEGEVIVNSLLTAPIETVEVKRDRRWIDTGNLYIETECWSDVLSCWYASGITTSKASHWSFILEDTVVIIPTDSVRKAIAVYGIKREMNRPEYSTKGFTITVADLFKVASRRRQSASQSQST |
| Ga0315909_1000127549 | F029091 | GAGG | MAQKAVKKIGQYRLYKVEGYGIYEIYYGTKATGVHVENIAHKENFEWAVAEIKQSVQQAVREGYGIGVSN |
| Ga0315909_1000127561 | F004793 | GAGG | MTIDQAKKIVGNQPTWALKNMVKALQMLPRLNTAEDEIRLIAAKIVLKERK |
| Ga0315909_100012759 | F008607 | AGG | MDAIYAKVAEFMTDSVVFTAKASVDKYNKPTFANSNTTVTGRLIYDTVKSKDVQGVEVVDIGRFITYGPATSITVGHRMVVGADTFTINGVDNIADENGAHHTVIRFGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |