NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10001275

Scaffold Ga0315909_10001275


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10001275 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33996
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (88.57%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004793Metagenome / Metatranscriptome423Y
F006261Metagenome / Metatranscriptome377Y
F008607Metagenome330Y
F011482Metagenome / Metatranscriptome290Y
F020531Metagenome223Y
F029091Metagenome / Metatranscriptome189Y
F057363Metagenome / Metatranscriptome136Y
F066709Metagenome126Y
F068750Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000127523F006261GAGGMATISSGYTTTVPIQITNPATWSFTAPESPTIKVNNIDVLQPLNSTIVESYGVFKPLGASKTVIVSQSIYGIDGTYEFVTTGETEWDELYPVLTYQGTLHVHDPLGRQKYVRFVDRNWTESGNINSLVRRVKVTYYEVGAP
Ga0315909_1000127526F057363AGGAGMDSKTQAMLASYGRSFLAAVTTAFMITGGDILALDGDALKAILAAGVSAVLPVAIRAANPKDPAFGKIADGVTEAVVKKITAKKSVKKK
Ga0315909_1000127528F011482AGGAGMRRLDDLTMEVKQMNLNVGQTYLRKDVYDSDTERISQAMDHITDRLEKMESRSEWVIRTVGALFIATVVGASMYVGQIIGI
Ga0315909_1000127532F068750GGAGGVSIRWITKVWSDSPYDGTRLLIHLALADISHDDGRFFASQSNLATKGRCSVEYVRKVINEMIADGHLKIITKGNSRGNATVYQLIWKKLPNIVGEEQSLGEVELPNSDTPNSPTLEAQLPNATPHHPSYTSVLSTTKSDETAIAVVALSEAVARKWWEKQRVKPLGKSAWHSLLAICQAA
Ga0315909_1000127533F020531AGGAGMNNQQLEQSTWQRSSAMSLSDLAILLGFIGIYDLRIQVDELKVRAWAESLDSDVPLDEAKKIVSWHYSNLDTAVTPAHINREWRRRLADARERERGRLMSLQYQELEKKKASPEFVTQIKKELLEKLNRGKDAPVEDDNGTVAPNS
Ga0315909_1000127543F066709GGAMSRSDWDLDLRFGQEGEVIVNSLLTAPIETVEVKRDRRWIDTGNLYIETECWSDVLSCWYASGITTSKASHWSFILEDTVVIIPTDSVRKAIAVYGIKREMNRPEYSTKGFTITVADLFKVASRRRQSASQSQST
Ga0315909_1000127549F029091GAGGMAQKAVKKIGQYRLYKVEGYGIYEIYYGTKATGVHVENIAHKENFEWAVAEIKQSVQQAVREGYGIGVSN
Ga0315909_1000127561F004793GAGGMTIDQAKKIVGNQPTWALKNMVKALQMLPRLNTAEDEIRLIAAKIVLKERK
Ga0315909_100012759F008607AGGMDAIYAKVAEFMTDSVVFTAKASVDKYNKPTFANSNTTVTGRLIYDTVKSKDVQGVEVVDIGRFITYGPATSITVGHRMVVGADTFTINGVDNIADENGAHHTVIRFGR

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