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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10000124 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 99699 |
| Total Scaffold Genes | 86 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (12.79%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003038 | Metagenome / Metatranscriptome | 511 | Y |
| F012010 | Metagenome / Metatranscriptome | 284 | Y |
| F069688 | Metagenome / Metatranscriptome | 123 | Y |
| F076870 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1000012465 | F069688 | N/A | MEDVNNIFTVDTVIEEGSYIKVTGEYQIPDSSLFKRGDILTEDKYNGHQIYVSFGTKDKDGKDGLILDTRSMHPAIKKPLDAVILGLNLFKIED |
| Ga0315909_1000012471 | F003038 | N/A | MGLSTTDLGTGTGQPKTIAPGNHVLKINSLMLEDFQFIDGAKHLVLNVETEPISGFEGFWVDKDDESKGKHNGQIGRVKASQYAFADGETKSGIKIQRDRSMMIFMQNLCKALDINDWFIAQDGLHQTIDDLIIAFNKTADFKDNYLEFCVAGKEYIGKTGYTNYDMYLPKSEKGKYAYGEVEGGKVIQYTEAIHLRKTEIKDVKAFGDDDSFSIPSKSSSDFSLD |
| Ga0315909_1000012476 | F012010 | N/A | MTEIFNKFVQEDITPDGYYVLHCIKEKIVPNNFVNNSLQVTKLKRYDWLNEDLTLTNKSLIFMAEINSFFKKTKAKTLQDLLGTKFIDKIQEYIELFPNRKLSSGKYARTTSKNLETSFKWFFENYSYDWETIIKATEKYVDDYSIRNYEFMRTSQYFIRKQNIDKSFESDLATYCELLNNGFDEPETYFKERIV |
| Ga0315909_1000012483 | F076870 | AGAAG | MEKTATNDIVLTKKFKKFLHSIAEEHYNMTSQNNDTTGLNHSLNYLWYMYHKGVNSGVYRPFIFMAEMHLLKEMGYMENDDIKNLNEMIKSEDTDNFYLGYLSLESLRNKRIKEHGAFSQGSKVYMDLVPDYASKILNTTLFKNALKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |