Scaffold Ga0315909

Basic Information
Taxon OID	3300031857 Open in IMG/M
Scaffold ID	Ga0315909_10000120 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031857 Open in IMG/M

Scaffold ID

Ga0315909_10000120 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	100927
Total Scaffold Genes	147 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	118 (80.27%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

100927

Total Scaffold Genes

147 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

118 (80.27%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.7464

Long. (^o)

-83.3444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001464	Metagenome / Metatranscriptome	689	Y
F030095	Metagenome / Metatranscriptome	186	N
F040629	Metagenome / Metatranscriptome	161	Y
F099174	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_10000120111	F000376	GGA	MSIYQEKAKECKCCGKHVPLPVRLKEYEGIKVCPTTFDNIIEYKRVWNEIGRRPPGNIRKHFSDYVQQIVEKTIDNNHVSNI
Ga0315909_10000120127	F099174	N/A	MRKLGASLASIMLAFTVTSCNFDGSFRYECQDPANWEKAECNPPICETTGTCSRDLVGQEIWDEYQKSKVKNG
Ga0315909_10000120131	F040629	N/A	MNKFSVKLEILAEVEAFDEDDARDYINDIFGTDDEVKSIKIISLAKK
Ga0315909_1000012037	F030095	AGG	MAAQKNFEVDQNATFNFEVQYLDEDESPIQLHFHTAKMQVRDTQGGKKVAFTLTESDGITISPTEGKLSVSISADRTNKLFYPKSAYDLVLIDPSVNKTRLLEGYMTLNRAVTI
Ga0315909_1000012071	F000258	GGGGG	MPNYKLDAMFELRKYLWNKMKAASIFDEHTYYADNLKETMVPIIPVQQVPEMNQFLSGKKHIIYDKIGMSYKDNWLICCEQILFTVYATDMIDIVEIRNFMTDEFRRMDESARDINYWSGLSDKFKFHSIFIADISPTKPSEEVQGFLASDIVLEIQYSRITDSSGRFA
Ga0315909_1000012086	F001464	AGG	MVRASRKKQTKRFSYFFLNNKIHKVLNYSRAKDELIAWCYPDKKRVLYSYSQVVKNMENAYSTKQVSQILNKHKITIEDYILDGKIKYPQKVYPISNPESDWYKFMYSESDIMDIHEFILESGYSKNMPSKTELKALLKHNTILYTKTNEGNFVPVWRAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315909_10000120

Overview

Ecosystem & Geography

Associated Families

Sequences