NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307410_11540344

Scaffold Ga0307410_11540344


Overview

Basic Information
Taxon OID3300031852 Open in IMG/M
Scaffold IDGa0307410_11540344 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)586
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005471Metagenome399Y
F091478Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307410_115403441F091478AGGAMAGCDMLYYDPTQLGQTRRDPAGHPLDPASDGWQPCTAPGQVRTDPDLVLRWICTKHRRQLTALHAVGLAGQVRWQRPGLTTGPTSSRE
Ga0307410_115403442F005471AGGAGGMHPQPYPTHSHPEPALHLLGGIWIASCPTCGWQLTSARTQQRCERRAARRRCPVCHQDGR
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