NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315320_10204025

Scaffold Ga0315320_10204025


Overview

Basic Information
Taxon OID3300031851 Open in IMG/M
Scaffold IDGa0315320_10204025 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1455
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000849Metagenome861Y
F004280Metagenome445Y

Sequences

Protein IDFamilyRBSSequence
Ga0315320_102040251F004280N/AMDRRNFIKGLIALASAPAIGKYVNIFKTEGAREGIEQVASQGVDFFNSVIKKVMDEGTLVKEQDRISTFKHPDRPDITVDVDQTTGSSSVYFDTDEGTKAVGEIQKTMDETTGGKVVEELFEQEEIYGPTGRDAQEGISGGITNLEKFLKGKRGFAAGGRVAMVRGGVPKGLQAAMRAIMEKYGKDSIKTVEDTQEFGLPYFNIDRPEKAIARDKFKNFGKEGKFAEDGTPD
Ga0315320_102040252F000849N/AGYEALPLLTGTPVAAAEIQRDAQGNIIKPQINQPTVGEPLKYDATQGSIVNANTDQKADQNQILEYVKDNPLKVTAGASLGFAAQEVPGAYKAARDLGRGRVRSTLGISGAIRPVLTTFGTPLLTGLYEGAIGAKRLDEGETMTDILTDPVGPALGLTLMEPLSKLSGVVKNAPKRTMLEGAKNYFNLSNVGQARPGLTGQILRMGLSPRMIAGASRFLGLPGIALGAGLAGYDAYKNYQNQEGMIYNLFNKDG
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