Scaffold Ga0315320_10035645

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10035645
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3924
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041491	Metagenome	160	Y
F059454	Metagenome	134	Y
F068141	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_100356454	F059454	N/A	MKSYLLKKLIAGYKVNPRHSGFDLVALPYKYTNEKILVRHSDKKMIIDKDTPLLGEQTFPDKFGRDKTYTLYYYQWEPSKNQIKLDL
Ga0315320_100356455	F041491	N/A	METNTISFNVSKTINIGNFEAIKINYGQSITIDPNKPVEIQREMLIEECYNVVKKETEIWQGLKAIQHVDSQKNTRVYKSKSK
Ga0315320_100356459	F068141	N/A	MSILGISFCAAIGYYIIVYKALGRRRLVKTQTFWDILFTLLLPLLFIGTFSGLATAVVAGVFFSVFTAMTPSVDEPNK