NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310907_10164749

Scaffold Ga0310907_10164749


Overview

Basic Information
Taxon OID3300031847 Open in IMG/M
Scaffold IDGa0310907_10164749 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1031
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026031Metagenome199N
F030448Metagenome185N

Sequences

Protein IDFamilyRBSSequence
Ga0310907_101647492F030448AGGGGGMQLARVGKDHPVAQLVHVEWGVREINELIDRQRKLVKELHESRSDFTSAKIVLDSLIVTLTLHLRERDQLLAMFNAEMAEVFAACRNASAEARSGWRQQAA
Ga0310907_101647493F026031N/AVAVGNRGQTLRIEMQFEDETREQIYLGPELAPRLVQSLIQGAATAERMRKAEPGSVVSTSTPWRAKDVRTGAIVGTDLFAIGFTTEEGPPVEIAMPRDVAEKTIRAILDDLKGGRPAKQD
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