NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310907_10108993

Scaffold Ga0310907_10108993


Overview

Basic Information
Taxon OID3300031847 Open in IMG/M
Scaffold IDGa0310907_10108993 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1210
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008771Metagenome / Metatranscriptome328Y
F009707Metagenome / Metatranscriptome314Y
F070506Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0310907_101089931F070506GAGMDTKKDSPLPLPKIERLVDDAKAELKRAGIETDGKRPDEIL
Ga0310907_101089932F008771N/AMYPSKRPPPRPITTPLLRVAVQGGEIVVTAPGSDYVMTYHKPADSLKLLAKTFPRKEDRRVTMTLASFLTAAYTLANDKARELGWIA
Ga0310907_101089933F009707GGTGGMIEQSDLNSGKEWSKKDLFSLRNRIEHGRKVAHVATFLSRTETEVREKAAELGLTLPD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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