NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310907_10000783

Scaffold Ga0310907_10000783


Overview

Basic Information
Taxon OID3300031847 Open in IMG/M
Scaffold IDGa0310907_10000783 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7640
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005305Metagenome / Metatranscriptome405N
F007651Metagenome / Metatranscriptome347N

Sequences

Protein IDFamilyRBSSequence
Ga0310907_100007831F007651GGAGMLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFREMHEESAQYYKQKANEQLDKMEKNIQSGNKLSAINEKLLADTYLSFATTI
Ga0310907_100007835F005305N/AVKDLEKELGPLIENFQNLLKDAKAKKIDSLREDEDLKKEFNKLSKDVIEPVMRKFESYLKSKDVSSSVNVRSEIVSGKNPSIQFSLHFKLTHESRYPNIKFSSYGEKISIQVDRLVTTGEVKQAMIQEYYDKEQITEEFINERLIRLIKSCFDKNWE
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