Scaffold Ga0310917_10013417

Overview

Basic Information

• Taxon OID: 3300031833
• Scaffold ID: Ga0310917_10013417
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4550
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005673	Metagenome / Metatranscriptome	393	Y
F036338	Metagenome	170	Y
F093053	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310917_100134171	F036338	N/A	LPGWWWNCGHCALRNGASLYVPGSSQIRVNYPSAVSGPDFAPRPEHLRLLHDPKWGKLFDSGFHCDRAGTVPLAMLAVFLEAKIALTLVQPEALANKVIRSNK
Ga0310917_100134172	F005673	N/A	MNSDRVIADAINCAQRLLWHTHDLPDAMKVVRLRKFIRSPIVQSAMLRCSDTLLAFTLRAVELVIADQSRTDREMIRRLCDILNNAHLIQAVGPQNSPFGPSWLSVRPAPGHGGMRWLRLSEQNFRVDKGSLCRG
Ga0310917_100134175	F093053	AGGA	MASPQQHFEASRKWQEHYQREVEDIGLNIPPPTLGQSTNNYRREMMRLLKKTFIPPTHDLYKVNMRGLPADVLEGFEQMLLPACRTRAGFGNLHRAISGASA