Scaffold Ga0255338_1000011

Overview

Basic Information

• Taxon OID: 3300031825
• Scaffold ID: Ga0255338_1000011
• Source Dataset Name: Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 840265
• Total Scaffold Genes: 750
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 510 (68.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Vancouver, British Columbia
• Coordinates
  • Lat. (^o): 49.2598372
  • Long. (^o): -123.2459363
  • Depth (m): .35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016875	Metagenome	244	Y
F021638	Metagenome / Metatranscriptome	218	Y
F054334	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255338_1000011354	F054334	N/A	MRATILAWSAISGLVLGLLAGVMLFAVLVIGGELAPAWVPRLAGRARLVAAVVSFAVLPLAGAVLGWLEGRLKLQ
Ga0255338_1000011544	F021638	GGAG	MSSSARRSTADLVAELHETAAGNDRAALVVGFDDRTEFVWASDPDALHALNAHVRSGGDPLGLLTGRDDGEGATSVRARPLAEYESAEWVEKYLITLLAEVRRSAAASGIESGPITG
Ga0255338_100001166	F016875	N/A	VSTSTALRVARYAELCYAGIAVVLAFGLPWPPRGPGVVLFAHWLGTALLAAAIALRIGRPNRQTWYVAALLSGYVLFNAAVAIVRLMGPDTNTLGRPGALALAVGALLWVTQGVVAVCLYYARELRTMPGAARRR