Scaffold Ga0307478_10004341

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10004341
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10137
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005311	Metagenome / Metatranscriptome	405	Y
F005887	Metagenome / Metatranscriptome	387	Y
F008092	Metagenome / Metatranscriptome	339	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_100043413	F005311	GGAGG	MGIGICGDALVRAANAMLAALGGDQVSLLLPATAMAGDAAGQLGLVDPGVQSVIVAPVVSRNLPTGNLGPARRIEFTLPASALTEQLPALGLGSAEDLFAAVLGLVYDGDIFHVETVVTENFAGTAYFYVVTAVE
Ga0307478_100043417	F005887	GAGG	MTVSDRELALRAIDIEFQREVLDKLVRLETKMDNLVGNGQPGRVKLVEDKVAVLERNDLRNSVHNRVLNGAISAGISAAIALHKYWLK
Ga0307478_100043418	F008092	AGGAG	MSTVPSTTIITNLKNVTAPTANTLTDSAAWAINLPGMMAVALTKANELKGCLTLIVRATDAADPNLAILNDILASLT