Scaffold Ga0307478_10000230

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10000230
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64447
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (83.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001114	Metagenome / Metatranscriptome	774	Y
F002012	Metagenome / Metatranscriptome	604	Y
F015675	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_1000023010	F002012	N/A	MSLSSTSVLIAGFTRTTCAALHNLKGVQSTLVASLVLLERLSSHHTDVYNILWAVVFGFATLNILSLAARRSEPNRRGLSFGELMAVMVVLLSIFLLGAELLNFVHIFPIKIQR
Ga0307478_1000023040	F001114	N/A	MSDQLGFISADQLHPDPYTQARNAERTLNVAIVHADISRSYEEYLEIFDEFYADDIEGSSETLEEPIRGKAGVRSLLFSFLAPLHTMAEVGGVSMSIRETPIPGDAIDETHSAWTLELVGVSGRICTMSWRILRKWNESRVVLEHHYDCQQSGEPLTHNDLRFEPPGAATGFQRPS
Ga0307478_1000023055	F015675	GAG	MLTNHEPDRNIEDLTDTEIYDAIRYLEPDPKSAKEMYEDDREKDNGVVICVCLYIALLGCLAFVWLYWR