Scaffold Ga0307478_10000038

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10000038
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 163116
• Total Scaffold Genes: 155
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 123 (79.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000410	Metagenome / Metatranscriptome	1170	Y
F000822	Metagenome / Metatranscriptome	876	Y
F001220	Metagenome / Metatranscriptome	744	Y
F105771	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_10000038119	F000822	AGGAG	MKRWAIVCTAWILAVGAYAQNSQVFHGEISDSQCALNVHSLTRSHQEMLKSKSMGGTANTCTMYCIEHLGGYLVLSSGNDVFRLDRSDLVHGFEGQKVKLTGTLDTKVKQIHVLKVELADPK
Ga0307478_10000038120	F001220	N/A	MAAVVTQLTGLPHTLAQTSVPQAHVIELLADSDSRYKIAGERIPEIIVKAGEPVLLRVTARRGKSWNRDGSIHGFSVLRAKDRTKVEGWDLLFKPGKQEFLLTAPTKPGEYVVVCTVICSEDHEGMHMKLIVLP
Ga0307478_10000038125	F105771	N/A	METAAEFFKKRAGQKTGDRLMEFLRNAPNVLPEPEDKVR
Ga0307478_10000038126	F000410	GAGG	MSRKLVWIELNRFRGFGCSDCAWRFKPSGAPEGKSFDEMMRNFELQRDKEFKSHVCAGHAADKNPG