Scaffold Ga0307478

Basic Information
Taxon OID	3300031823 Open in IMG/M
Scaffold ID	Ga0307478_10000011 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	301539
Total Scaffold Genes	277 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	218 (78.70%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

301539

Total Scaffold Genes

277 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

218 (78.70%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000138	Metagenome / Metatranscriptome	1954	Y
F000687	Metagenome / Metatranscriptome	937	Y
F001818	Metagenome / Metatranscriptome	630	Y
F005153	Metagenome / Metatranscriptome	410	Y
F033529	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_1000001114	F001818	N/A	MEKRRKTDQMPDENSPHDVATYRRAWHSYVARRNLVVVLFLSFIFLGVMIGKLKLGEPADSAILLGWILVYLAGGWWLTEWKCPRCGKVFGHRLWTQRCISCDLSKDDVAAVARGKASSTGIDLSAVPDAKNQHH
Ga0307478_10000011212	F033529	GAG	LTRATRILALALFFVSVVDFGLDSARFDLVVMTAAVAIFFSGGLRSP
Ga0307478_1000001122	F000138	AGGAG	MPVQWINSFRFSFTTFVSYIPLIATVLTCLFSVVLARATLRYVESTDKGLALAREEFEREWTPDLHIKLERVSSTEAQVIVTNLAKSSVLLQLLQLRKLSHAVPFERCRLNDPLVGGMTWTQEMGKRILACTGKEFEGPIAASMTFYCSGRMFRTDWFRSHIQVRDGRIHKLEPSNMPARRVRVLERKGPERRREFVQDVTASNDSDRKLDNNFLVTGAGT
Ga0307478_1000001147	F005153	GAGG	MQVFHIRYRNAQGALMRILNAVSRRGLDLTSVHAEYVGQDHAVTLLLEVSQKQLGQLSREWYAIVDVIEVRSSSVLRGRAEPAWVPHPPASESVVQQSARAALA
Ga0307478_1000001196	F000687	GGAGG	MQQVGDVVRTIPNSGTGHVEEVVRQAHDELRQLLQQRAEVMRRIGTIKQTIAGLANLFGDGVLSDELLELVDRKSSGRQPGFTKACRMVLMDANHPLSARDVCDRIQQRASTMLERHKDPMASVTTVLNRLVAYGEARAVVLDNGRRAWQWVADSESELTPELEEESTQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307478_10000011

Overview

Ecosystem & Geography

Associated Families

Sequences